Hi, eitsky! I love to read these kinds of books, but I think my suggestions might be more science fiction than fantasy? I recommend The Neanderthal Paralax, which is a trilogy by Robert J. Sawyer. It's fascinating because a human scientist accidentally trades places with a Neanderthal where in their world the humans were the ones to go extinct. The civilization they've built is incredible.
Another book I'd recommend is Darwin's Radio by Greg Bear. If you haven't read his books, he's incredible.
But, the most shocking and awesome book I've read is called Brain Plague by Joan Slonczewski. It's about sentient colonies of micro organisms.
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Science Fiction is great too! I've read some books by Peter F. Hamilton that I really enjoyed and that was Science Fiction.
Thanks for all of the suggestions! I just added them to my goodreads account. I was hoping to get more responses but this is a great start. :D