Humanity will eventually cause its own extinction, along with a majority of the currently existing flora and fauna. The Earth's geography will remain largely the same, and the remaining species will adapt to whatever environment we leave behind. In a million years hence, there will virtually no trace of humankind's occupation of the planet.
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There was an analysis of the topic by the Discovery group (when they worked with science, not the shit they do now). According to it, our fingerprint would vanish in a couple hundred of years. A blink of an eye, even for human standard timelines.